Transparent, Project-Based Pricing
Every analysis includes expert review and validated results. No subscriptions, no hidden fees.
Standard Analysis
Single pipeline analysis with expert review. Ideal for focused analyses with clear research questions.
- One Align__ pipeline applied to your dataset
- Quality control and preprocessing
- Complete analysis report with methodology
- Publication-ready figures
- Expert review and interpretation notes
- Results delivered in 3-5 business days
Multi-Pipeline Project
Multiple pipelines with integrated interpretation. Ideal for studies requiring multiple analytical perspectives.
- Two or more Align__ pipelines on the same dataset
- Cross-pipeline integration and interpretation
- Comprehensive report connecting findings
- Extended expert consultation on results
- Results delivered in 1-2 weeks
Comprehensive Study
Full multi-omics analysis with publication support. We become an extension of your research team.
- Complete analytical workflow across multiple data types
- AI-enhanced interpretation with multi-agent evaluation
- Publication-quality figures and methods sections
- Follow-up consultation included
- Manuscript support available
- Timeline: 2-4 weeks depending on scope
Additional Services
Consulting
$150–250/hour
Expert consultation for experimental design, results interpretation, method selection, or bioinformatics training.
AlignLearn Reports
$200–500
AI-generated educational content on any bioinformatics topic. Professional documentation in PDF, EPUB, or HTML format.
Rush Processing
+50%
Expedited analysis for time-sensitive projects. Subject to availability.
Multi-Experiment Project Bundles
Running a study that generates data over weeks or months? Bundle your analyses into a single project for volume pricing and consistent methodology across all your experiments.
How Project Bundles Work
You're running a time-course experiment generating RNA-seq data monthly. Or your lab performs quarterly single-cell experiments on patient cohorts. Instead of scoping each analysis separately, we bundle them into a single project with negotiated per-analysis pricing.
Beyond the cost savings, bundled projects benefit from methodological continuity — we maintain consistent parameters, reference datasets, and analytical approaches across all your experiments, making cross-timepoint comparisons meaningful rather than artifact-prone.
Commitments are flexible and negotiated per project. Mix pipeline types (e.g., AlignRNA + AlignImmune on the same cohort) or keep it focused on a single workflow. We'll design the arrangement around your research timeline.
Enterprise & Partners
For CROs, diagnostic laboratories, and hospitals that need embedded bioinformatics analysis as part of their service offering.
White-Label Bioinformatics Infrastructure
Your clients expect analytical results bundled into your reports and deliverables. AlignMatrix provides the bioinformatics engine behind the scenes — validated pipelines, publication-quality figures, and expert-reviewed interpretations delivered under your brand or as a "Powered by AlignMatrix" co-brand.
Defined turnaround windows (48–72h standard) with priority processing options for urgent samples.
Annual contracts with per-sample pricing that scales with volume. Predictable costs for predictable throughput.
Analysis reports formatted for your brand, ready to include in your client deliverables without modification.
Audit trails, reproducible pipelines, and documentation aligned with GLP/GCP and CAP laboratory standards.
Enterprise partnerships are structured as annual agreements with dedicated support, custom report templates, and optional API/LIMS integration. Typical partners process 50–500+ samples per year across one or more Align__ pipelines.
Frequently Asked Questions
Every analysis is reviewed by a domain expert before delivery. We examine results for biological plausibility, identify potential artifacts or batch effects, and provide interpretation context. You receive not just figures and tables, but expert judgment on what the data means.
We work with standard formats: count matrices (CSV/TSV) for bulk RNA-seq, 10X Genomics output (filtered feature-barcode matrices, .h5 files) for single-cell and spatial data, and FASTQ files when alignment is needed. During project scoping, we'll confirm compatibility and discuss any format conversion requirements.
Standard analyses are delivered in 3-5 business days. Multi-pipeline projects typically take 1-2 weeks. Comprehensive studies require 2-4 weeks depending on scope. Rush processing is available for time-sensitive projects.
Your data is transferred via encrypted channels (SFTP or secure upload link), processed on secure cloud infrastructure, and deleted after project completion unless you request retention. We can sign NDAs and execute data use agreements as required by your institution.
Absolutely. Every project is scoped individually based on your specific dataset, research questions, and timeline. Contact us to discuss your needs and receive a detailed proposal.
Submit a project request describing your data and research questions. We'll recommend the appropriate pipeline(s) and explain our reasoning. There's no obligation—you'll receive a clear scope and quote before any work begins.
We offer competitive pricing for academic institutions and can work within grant budget constraints. Contact us to discuss your situation.
If your research involves multiple analyses over time — such as a longitudinal study or recurring experiments — we offer bundled pricing with volume discounts. Commitments are flexible and negotiated per project. Contact us to discuss your timeline and we'll propose an arrangement.
Yes. Our Enterprise partnership model provides white-label bioinformatics analysis that integrates into your existing service offering. This includes SLA-guaranteed turnaround, branded reports, volume pricing, and compliance-ready documentation. Contact us to discuss a partnership.
Ready to Discuss Your Project?
Submit a request and receive a scoping proposal within one business day.